A collection of review papers concerning variant detection, not yet with comments.
Reviews
Genome structural variation discovery and genotyping
Can Alkan, xxx, Evan Eichler 2011 Nature Genetics Reviews
Computational methods for discovering structural variation with next-generation sequencing
Paul Medvedev, Monica Stanciu and Michael Brudno November 2009 Nature Methods
Structural variation in the human genome
Lars Feuk, Andrew R. Carson and Stephen W. Scherer 2006 Nature Reviews Genetics
Genome variation discovery with high-throughput sequencing data
Adrian V. Dalca and Michael Brudno January 2010 Bioinformatics