These are brief weekly reports about the status of the BSc Thesis
StellarMotifFinder.
Week 1 (25.07.2012 - 31.07.2012)
- Tutorial Motif finding
- read up on STELLAR[1] and SeqAn::T-Coffee[2]
- generated test data
- checked out STELLAR
Week 2 (01.08.2012 - 07.08.2012)
- read about segment match refinement
- started implementing 'segmentation generation'
- the dataset that I generated for testing purposes(last week) did not include random errors → changed that
Week 3 (08.08.2012 - 14.08.2012)
- completed implementation of segmentation generation
- read about progressive alignment
Week 4 (15.08.2012 - 21.08.2012)
- through with implementation of refinement and alignment
Week 5 (22.08.2012 - 28.08.2012)
- in the former sequence-generating-script, the inclusion of errors or rather the resulting error rate was sort of arbitrary → improved
- adaptation of the preliminary steps to the existing interface