Research Projects

(For master  students)

All research projects labeled with are not yet assigned to a student. Please contact the tutors if you are interested.

Thomas Schüler: Detection of mass traces in LS/MS data sets
Date: 01.11.2007Project: ProteomicsTutor(s) : Clemens Gröpl, Tobias Rausch
Das Ziel der Arbeit ist die Entwicklung und Implementation von Algorithmen zum Finden von Massenspuren in LC/MS Datensätzen.
Projects from 2007
Christian Hoffmann: RNA chimer detection pipeline
Date: 01.08.2006Project: RNA AnalysisTutor(s) : Reinert
The goal is to evaluate different chimerdetection packages using data from the Venter Institute and a self written Chimerism Simulator.
Projects from 2006
Martin Langwisch: Comparison of LC/MS data analysis tools
Date: 09.08.2006Project: ProteomicsTutor(s) : Reinert / Schulz-Trieglaff
Several software projects (MapQuant, TPP, MzMine) have been published that are direct competitors for OpenMS. The goal of this research project (Forschungspraktikum) is to compare two of these projects to OpenMS.
Christian Ehrlich: Detecting Secondary Structure Elements
Date: 16.06.2006Project: RNomicsTutor(s) : Bauer,Klau
The aim of this research project is the implementation of an efficient algorithm that searches large genomic sequences for predefined secondary structure elements.
Chris Bielow: Preprocessing of LC-MS data
Date: 01.08.2006Project: ProteomicsTutor(s) : Reinert, Lange, Schulz-Trieglaff
The goal is to implement a signal to noise estimator and some calibration methods for the OpenMS framework.
Hendrik Wöhrle: Implementierung einer deferred skiplist
Project: SeqAnTutor(s) : Döring
In diesem Forschungspraktikum soll eine deferred skiplist für die Softwarebibliothek SeqAn programmiert werden.