(Please report any broken links etc. to the authors.)
2008
 | Markus Bauer, Gunnar Klau, Knut Reinert |
"An Exact Mathematical Programming Approach to Multiple RNA Sequence-Structure Alignment.". Algorithmic Operations Research, 2008. to appear.
BibTeX2007
| Knut Reinert, Markus Bauer, Andreas Döring, Gunnar W. Klau, Aaron L. Halpern |
"A general paradigm for fast and adaptive clustering of biological sequences". In "German Conference on Bioinformatics (GCB 2007)", pages 15-29, 2007.
| Patrick May, Gunnar W. Klau, Markus Bauer, Thomas Steinke |
"Accelerated microRNA Precursor Detection Using the Smith-Waterman Algorithm on FPGAs". In "Proc. of GCCB 2006", LNBI, volume 4360, pages 19-32, 2007.
| Markus Bauer, Gunnar Klau, Knut Reinert |
"Accurate multiple sequence-structure alignment of RNA sequences using combinatorial optimization.". BMC Bioinformatics, number 1, volume 8, pages 271, Jul 2007.
2005
| Bauer, M., Klau, G.W., Reinert, K. |
"Fast and Accurate Structural RNA Alignment by Progressive Lagrangian Relaxation". In "Proceedings of the 1st International Symposium on Computational Life Science (CompLife-05)", pages 217-228, 2005.
BauKlaRei05a.pdf | Bauer, M., Klau, G.W., Reinert, K. |
"Multiple Structural RNA Alignment with Lagrangian Relaxation". In "Proceedings of the 5th Workshop on Algorithms Bioinformatics (WABI-05)", pages 303-314, 2005.
2004
| Markus Bauer, Gunnar Klau |
"Structural Alignment of Two RNA Sequences with Lagrangian Relaxation". In "Proceedings of the 15th International Symposium, ISAAC 2004, Hong Kong", LNCS 3341, pages 113-125, 2004. Springer Verlag.